Category: Research

MTU Ecosystem Ecologist Helps Bring ‘Foundations of’ series into a New Era

Amy Marcarelli stands outdoors at the Great Lakes Research Center on a sunny day.
Michigan Tech Biological Sciences Professor Amy Marcarelli is the co-editor of recently published Foundations of Stream and River Ecology, a revival of Chicago Press’ Foundations of… series.

Biological Sciences professor Amy Marcarelli is the proud co-editor of recently published Foundations of Stream and River Ecology: A Guide to the Classic Literature. The book is a continuation of the University of Chicago Press Foundations of series, which began with the first publication of Foundations of Ecology over 30 years ago. The series had temporarily lapsed in publications as resources for academic papers shifted to digital availability, but has been brought back with a new perspective in this latest addition.

Previous editions in the series reprinted academic research papers in their entirety, with a brief introduction explaining the editors’ reason for including those particular papers. The goal, Marcarelli said, was to get these foundational papers into the hands of graduate students and others exploring a new field. Now that academic papers are more readily available online, Marcarelli and her co-editors took a different approach with their compilation.

“If you don’t know the original literature you run the risk of reinventing the wheel.”

– Amy Marcarelli, biological sciences

The book is designed to not only refer researchers to classic literature in the field, but to provide additional context to each paper’s place in the history of stream and river ecology. Instead of fully reprinting each paper, the book is presented as an annotated bibliography with summaries of each paper, and a “looking forward” section highlighting changes to the field after those papers were published.

This book is also the first comprehensive work of its kind in the relatively new field of stream and river ecology. While most established labs and courses have a recommended reading list passed down by mentors, Marcarelli said this is the first compilation published with additional context for those papers. Most papers included in the book were published before the 2000s, which was an intentional reaction to the modern landscape of digital research paper databases.

“When students go to do research there is sort of a sense that newer papers are better or sometimes it is more difficult to find older papers,” said Marcarelli, “Some of those indexes don’t go much before the mid-80s or they have poor coverage of papers before then.”

The book sits on a brown table. The cover art shows a rocky stream in the forest. The text reads: “Foundations of Stream and River Ecology: A Guide to the Classic Literature Edited by Wyatt F. Cross, Jonathan P. Benstead, Amy M. Marcarelli, and Ryan A. Sponseller
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Amy Marcarelli co-edited Foundations of Stream and River Ecology: A Guide to the Classic Literature, which was published by University of Chicago Press in December 2024.

Marcarelli and her co-editors have found many seeds of unexplored ideas and unanswered questions still exist within older, classic papers and wanted to bring them to students’ attention.

“A lot of those early papers have a lot in them, and they get cited for one thing but there is so much more material and ideas embedded in those. Things that in our current, concise, very focused scientific writing style we don’t include in our modern papers but they are certainly there in the older papers,” said Marcarelli.

Marcarelli was invited to the project by her long-time colleague and lead editor Wyatt F. Cross. While she has never done research directly with Cross or her other co-editors, Jonathan P. Benstead and Ryan A. Sponseller, they have all collaborated in their shared field for many years and are members of the Society for Freshwater Science. The project was created with editors from a variety of backgrounds to provide additional perspectives, and that intentionality carried over to discussions of diversity when editing the book.

One of Marcarelli’s major contributions to the book was reconciling who did the research behind each paper and why, as well as who may have been excluded from the table in the past.

“You can’t discount the work that was done in the past because it was done in a culture where some people had opportunities and some didn’t, but you also have to be careful not to exacerbate past sins, for lack of a better word,” said Marcarelli.

Though Marcarelli said stream and river ecology has had key female leaders since the 1970s, representation in the field has still been predominantly male and white. Editors focused especially on highlighting diverse voices of up and coming researchers in the book’s “looking forward” sections. Their journey to encourage diversity in the field is expressed in greater detail in the book’s forward and epilogue.

“We talked a lot about not just paying attention to things like citation count. Thinking about where there might be papers by groups or people that maybe haven’t been recognized as as important as they should be and trying to highlight those where possible,” she said, “not just thinking about gender diversity, but also about geographic diversity.”

Copies can be purchased through The University of Chicago Press. Marcarelli also plans to make copies available in the J. Robert Van Pelt and John and Ruanne Opie Library as well once they have been shipped to her.


About the College of Sciences and Arts

The College of Sciences and Arts is a global center of academic excellence in the sciences, humanities, and arts for a technological world. Our teacher-scholar model is a foundation for experiential learning, innovative research and scholarship, and civic leadership. The College offers 33 bachelor’s degrees in biological sciences, chemistry, humanities, kinesiology and Integrative physiology, mathematical sciences, physics, psychology and human factors, social sciences, and visual and performing arts. We are home to Michigan Tech’s pre-health professions and ROTC programs. The College offers 25 graduate degrees and certificates. We conduct approximately $12 million in externally funded research in health and wellness, sustainability and resiliency, and the human-technology frontier.

Follow the College on Facebook, Instagram, LinkedInX and the CSA blog. Questions? Contact us at csa@mtu.edu.

From a Childhood Dream to the Forests of the Pacific Northwest: New Documentary Chronicles Michigan Tech Entomologist’s Journey

Thomas Werner sits inside his mobile lab tent in front of a microscope, imaging fruit flies. The lighting is tinted blue as it filters through the tent walls.
Genetics and developmental biology professor Thomas Werner’s quest to document fruit flies across North America is captured in the new documentary All the Little Things.

How do you capture microscopic images of miniscule fruit flies when you’re 3,000 miles away from the lab? Grab some popcorn and kick back in the Van Pelt and Opie Library at Michigan Tech to find out.

All the Little Things, a new documentary film featuring the work of genetics and developmental biology professor Thomas Werner will be screened at 2 p.m. on Wednesday, Jan. 22. A Q&A will follow the 40-minute film. Admission is free, the public is invited, and yes, popcorn will be served.

Physicist’s Search for a New Project Leads to Discovery and Publication

View of the HAWC Observatory with mountains in the background
Data from the HAWC Observatory, shown here, was central to the research project. (Image credit: Jordan Goodman/HAWC Collaboration)

When postdoctoral scholar Xiaojie Wang of the Michigan Technological University Physics Department went looking for her next research topic, she found a previously unexplored region and a path to publication.

Wang is lead corresponding author of the article, “Ultra-High-Energy Gamma-Ray Bubble around Microquasar V4641 Sgr” recently published in Nature journal. The findings highlighted in the article offer new insights into how microquasars might contribute to the cosmic-ray energy spectrum—a long-standing puzzle in astrophysics.

“While reviewing the sky maps in search of my next project, I noticed a region five degrees away from our galactic plane with bright emissions that had not been visible in previous datasets,” said Wang, who works with Petra Huentemeyer, a distinguished professor of physics at Michigan Tech. “No gamma-ray source has been identified nor analyzed in this region—so I seized the opportunity and led the analysis.”

Abe Stone: Making a Difference and Making Headlines

Undergraduate researcher Abe Stone records inoculation data in his notebook.

Michigan Tech undergraduate researcher Abe Stone has been garnering headlines for his work. The ecology and evolutionary biology major demonstrates the adage that science isn’t done until it’s communicated. He also illustrates how the Summer Undergraduate Research Fellowship program helps students conduct impactful interdisciplinary research.

Stone was most recently quoted by The Cool Down in a story about SuperPurp, his unconventional fungus-based treatment aimed at controlling the spread of invasive buckthorn trees that threaten to engulf forest landscapes in the Midwest. The story referenced the research’s debut on Michigan Tech’s Unscripted Research Blog, and was picked up by Yahoo! News. Stone was also interviewed by ABC-10 in Marquette.

Stone was a guest on the Mushroom Revival podcast in June to talk about his research journey to Michigan Tech, where he worked to develop a sprayable fungus as a more efficient way to propagate chondrostereum purpureum, the pathogen that causes silverleaf disease in trees. Nicknamed SuperPurp and developed in the College of Forest Resources and Environmental Science’s forest microbiology lab, it’s a locally sourced chemical-free alternative to control buckthorn that could help to slow the spread of invasive buckthorn without harming nearby species.

New Institute Brings Keweenaw Time Traveler to the World—And New Researchers to Keweenaw

Two children viewing the time traveler demo with an researcher

Deep-mapping projects like Keweenaw Time Traveler can engage communities in meaningful, multi-generational explorations. (Image courtesy KeTT)

An advanced institute in the spatial and digital humanities is coming to Michigan Tech.

Don Lafreniere, a professor of geography and geographic information science (GIS) in Tech’s Department of Social Sciences is leading a team of researchers, staff, and students from Michigan Tech and Wayne State University on project that will develop the National Endowment for the Humanities (NEH) Community Deep Mapping Institute. The project is supported by a $250,000 NEH grant.

Two CSA Faculty Recognized for Outstanding Contributions to Michigan Tech

Brick two story building with concrete walkways in front, surrounded by green grass, shrubs, and trees.
The Social Sciences Department, home department of University Professor Kathy Halvorsen is housed in the AOB Building on the Michigan Tech campus.

Kathy Halvorsen and Quiying Sha have been honored for their substantial contributions to teaching, research, and service and are among seven professors recognized through Michigan Tech’s Distinguished and University Professorships. They represent a small percentage of faculty recognized with these awards by the Office of the Provost and Senior Vice President for Academic Affairs.

University Professors represent no more than two percent of the total number of tenured and tenure-track faculty at Michigan Tech. Since its inception in 2020, four of the seven University Professors have hailed from the College of Sciences and Arts, including three from the Department of Physics. Halvorsen is the first recipient from the Department of Social Sciences.

Distinguished Professors represent no more than 10 percent of the number of tenured and tenure-track faculty in a specific college or school. Since its inception in 2018, four of the 11 Distinguished Professors have been chosen from the College of Sciences and Arts. Sha is the first recipient from the Department of Mathematical Sciences.

Academic Alchemist: Chemistry Professor Named Associate Dean of Graduate Research and Education

The College of Sciences and Arts is pleased to announce Ashutosh Tiwari as our first Associate Dean for Graduate Research and Education. He officially started in this brand new position on July 1 and will be working closely with Interim Dean of the College of Sciences and Arts Ravindra Pandey.

In this new role, Dr. Tiwari serves as the College’s primary point person for issues related to graduate education, identifying interdisciplinary research opportunities and online graduate certificate programs within the University.

Ashutosh Tiwari
Ashutosh Tiwari, Associate Dean for Graduate Research and Education

A broadly trained protein chemist and cell biologist, Dr. Tiwari is a professor of chemistry at Tech. His research is in the area of ‘protein aggregation diseases’ with emphasis on age-related neurodegenerative disorders such as Amyotrophic Lateral Sclerosis (ALS), Alzheimer’s disease (AD), Parkinson’s disease (PD), prion diseases, and Huntington’s disease (HD). He has received numerous grants as PI or as Co-PI  from the National Institutes of Health, the ALS Therapy Alliance, Amyotrophic Lateral Sclerosis Association (ALSA), and the MTU Research Excellence Fund.

“I have served the University for almost 14 years and am excited to be Associate Dean,” said Tiwari. “The College has a number of exciting research initiatives crossing disciplines such as turning plastics into protein for use as an emergency food source; investigating physics and chemistry of cloud formation; understanding the impacts of multitasking on cognitive performance; using hydropower to store energy in old hard-metal mines; and understanding the ways in which new media technologies can facilitate the spread of misinformation. I want to seek out other exciting collaborations. Plus, the College is a diverse and productive unit with a strong record of excellence in graduate research and education. I will use my experiences mentoring successful graduate students to advance the goals of our college.”

Needless to say, we are pleased to have Dr. Tiwari lead this important initiative.

Michigan Tech Opens COVID-19 Testing Lab

Researchers in a lab doing covid-19 testing.

Starting this week, Michigan Technological University will begin testing patient samples for COVID-19, working alongside regional health care providers. With delays in testing across the nation, rural and remote regions like the Upper Peninsula have been hard pressed to get enough tests for patients. But there is hope.

Michigan Tech has partnered with local hospitals to begin receiving and testing patient samples on campus to save doctors and health care providers at least 24 hours, and up to a week, of waiting for COVID-19 test results. The lab has the capacity to run 40 samples per hour on two machines, and the team has plans to expand with more equipment and staffing.

Read the full story on Michigan Tech News.

Call for Applications: Songer Research Award for Human Health Research

2018-19 Songer Award Recipients. Pictured Left to Right: Abby Sutherland, Billiane Kenyon, Jeremy Bigalke, Rupsa Basu, Matthew Songer, and Laura Songer.

Matthew Songer, (Biological Sciences ’79) and Laura Songer (Biological Sciences ’80) have generously donated funds to the College of Sciences and Arts (CSA) to support a research project competition for undergraduate and graduate students. Remembering their own eagerness to engage in research during their undergraduate years, the Songers established these awards to stimulate and encourage opportunities for original research by current Michigan Tech students. The College is extremely grateful for the Songers’ continuing interest in, and support of, Michigan Tech’s programs in human health and medicine. This is the second year of the competition.

Students may propose an innovative medically-oriented research project in any area of human health. The best projects will demonstrate the potential to have broad impact on improving human life. This research will be pursued in consultation with faculty members within the College of Sciences and Arts. In the Spring of 2019, the Songer’s gift will support one award for undergraduate research ($4,000) and a second award for graduate research ($6,000). Matching funds from the College may allow two additional awards.

Any Michigan Tech student interested in exploring a medically related question under the guidance of faculty in the College of Sciences and Arts may apply. Students majoring in any degree program in the college, including both traditional (i.e., biological sciences, kinesiology, chemistry) and nontraditional (i.e., physics, psychology, social science, bioethics, computer science, mathematics) programs related to human health may propose research projects connected to human health. Students are encouraged to propose original, stand-alone projects with expected durations of 6 – 12 months. The committee also encourages applications from CSA students who seek to continue research projects initiated through other campus mechanisms, such as the Summer Undergraduate Research Fellowship (SURF) program, Pavlis Honors College activities or the Graduate Research Forum (GRF).

Funds from a Songer Award may be used to purchase or acquire research materials and equipment needed to perform the proposed research project. Access to and research time utilizing University core research facilities, including computing, may be supported. Requests to acquire a personal computer will be scrutinized and must be fully justified. Page charges for publications also may be covered with award funds, as will travel to appropriate academic meetings. This award may not be used for salary or compensation for the student or consulting faculty.

To apply:

  • Students should prepare a research project statement (up to five pages in length) that describes the background, methods to be used, and research objectives. The statement also should provide a detailed description of the experiments planned and expected outcomes. Students must indicate where they will carry out their project and attach a separate list of references/citations to relevant scientific literature.
  • The application package also should provide a concise title and brief summary (1 page) written for lay audiences.
  • A separate budget page should indicate how funds will be used.
  • A short letter from a consulting faculty member must verify that the student defined an original project and was the primary author of the proposal. The faculty member should also confirm her/his willingness to oversee the project. This faculty letter is not intended to serve as a recommendation on behalf of the student’s project.

Submit applications as a single PDF file to the Office of the College of Sciences and Arts by 4:00 p.m. Monday, April 22. Applications may be emailed to djhemmer@mtu.edu.

The selection committee will consist of Matthew Songer, Laura Songer, Shekhar Joshi (BioSci) and Megan Frost (KIP). The committee will review undergraduate and graduate proposals separately and will seek additional comments about the proposed research on an ad-hoc basis from reviewers familiar with the topic of the research proposal. Primary review criteria will be the originality and potential impact of the proposed study, as well as its feasibility and appropriateness for Michigan Tech’s facilities.

The committee expects to announce the recipients by early May of 2019. This one-time research award will be administered by the faculty advisor of the successful student investigator. Students will be expected to secure any necessary IRB approval before funds will be released. Funds must be expended by the end of spring semester 2020; extensions will not be granted. Recipients must submit a detailed report to the selection committee, including a description of results and an accounting of finds utilized, no later than June 30, 2020.

Any questions may be directed to Megan Frost (mcfrost@mtu.edu), David Hemmer (djhemmer@mtu.edu) or Shekhar Joshi (cpjoshi@mtu.edu).